Docker Registry Browser

Namespace

ezlabgva

Image / Tag

busco:v4.0.4_cv1

Content Digest

sha256:334fcf642d8ed77232abfcb8485a1c3afec061191ec17651b0d0548eeaf6cfb9

linux / amd64

Details

Created

2020-02-12 17:19:48 UTC

Size

1.45 GB

Content Digest

Labels

about.documentation

https://busco.ezlab.org/busco_userguide.html
about.home

https://busco.ezlab.org/
about.license

SPDX:Apache-2.0
about.license_file

https://github.com/BioContainers/containers/blob/master/LICENSE
about.summary

Biodocker for BUSCO:Benchmarking Universal Single-Copy Orthologs
about.tags

genomics, transcriptomics, metagenomics, bioinformatics, evolution
base.image

biocontainers/biocontainers:v1.1.0_cv2
base_image

ubuntu:16.04
license

https://gitlab.com/ezlab/busco/blob/master/LICENSE
software

BUSCO:Benchmarking Universal Single-Copy Orthologs
software.version

4.0.4
version

v4.0.4

Environment

AUGUSTUS_CONFIG_PATH

/augustus/config

BUSCO_CONFIG_FILE

/busco/config/config.ini

DEBIAN_FRONTEND

noninteractive

HOME

/home/biodocker

PATH

/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin:/augustus/bin:/augustus/scripts

Layers

[#000] sha256:9ff7e2e5f967fb9c4e8099e63508ab0dddebe3f820d08ca7fd568431b0d10c0e - 2.81% (41.7 MB)

[#001] sha256:59856638ac9f32d4caa0f5761b2597fe251642786fdfe1b917ddbb074b890c29 - 0.0% (848 Bytes)

[#002] sha256:6f317d6d954b9a59c54b2cb09e1f30cd3e872796e431cd2ceac5ed570beb2939 - 0.0% (526 Bytes)

[#003] sha256:a9dde5e2a643eca8fde0eed52f4aed31f3ecd9c1b2f24d5e3729cd8d2ae68177 - 0.0% (168 Bytes)

[#004] sha256:675cac559d077f6708a9931d90e801a5834a419b80aedf8fa01499be09d0e08d - 0.0% (956 Bytes)

[#005] sha256:0e6dd20ee818794f2f70b3dad6316630256644ecd340435fb273da623245ca78 - 6.92% (103 MB)

[#006] sha256:374c558e71daf84e430cf7bbb4af95cec0a3d2984eff3a27858ee0d03be6049d - 2.1% (31.1 MB)

[#007] sha256:0df3c64bb19acab06b69728650bd3c3ed7193efe01f7027a81c44e6d9910bc81 - 0.03% (505 KB)

[#008] sha256:e936d7784cf988634bb8c3f94b8d895416e17be11ea0540abca85d225043da4d - 0.0% (112 Bytes)

[#009] sha256:4dfd8d164cc5809f0fb8556fb27c931ef5c319353819af28a0b4df9301e54f8d - 0.0% (4.61 KB)

[#010] sha256:473490461998ab1efd3fb4c270d5d051d2bb65aca7c361efacb342dda4b5fef3 - 0.0% (143 Bytes)

[#011] sha256:8f5e491552e6efef12e515fdeb085d6cc85925d6167f91d1aa3cfb727c557914 - 0.0% (7.3 KB)

[#012] sha256:a66ab3a674d95f89aeb3259740e46128cec4f2d406cc1f631d14b5806483aac5 - 0.0% (229 Bytes)

[#013] sha256:18f922275a6f0d7dde75027a285dd23437bd26de80f7e66a025a49739b63db79 - 2.97% (44.2 MB)

[#014] sha256:1c9260eb2186af333a171563b62fa4d3849716ace56f674b7e1aff6d1a699e6c - 6.58% (97.7 MB)

[#015] sha256:0b366ccb1c208c2eb9b30bffb50d7a2c5ca4fa3f623fd8d3ad957b3ab9e1ed2c - 1.7% (25.2 MB)

[#016] sha256:12a34477da1b138ce11d876713fcaac40317ed3f64df96fba683e23d290c1f5e - 2.22% (33 MB)

[#017] sha256:505ddc88c7b6a5499e51410e81992fc04e21d5532db70e105c30a86f1b401111 - 9.25% (137 MB)

[#018] sha256:ef514bb8ee36f1102082e6b8e39d26cc25d7e53549a57a6115184174e2de125f - 9.13% (136 MB)

[#019] sha256:8ced4b43e4ce3b023a8e2244662c4df116454d4ec5d6f01035e43e84183ad10e - 8.01% (119 MB)

[#020] sha256:659fffe771ebbf471908fb3fc3ffe26c9d70ab22166078b8047845d63e41b72f - 0.0% (126 Bytes)

[#021] sha256:d3620f8acfc18cc951f5ebe9bf0c3bf87be015b293748d17bbd26632a04a516d - 2.71% (40.2 MB)

[#022] sha256:8bf764b7323a8e071aac0f924e0f29e323cbaaf5376ecf6c65233767b04be8fd - 1.82% (27.1 MB)

[#023] sha256:967ba37da3768b73d35b1ef96a7335acb4773e366ba942b114bd9cb1c2602491 - 0.04% (634 KB)

[#024] sha256:1a6b786b455d57e30e7d7588cc339dda7da847a47e27903cacd6f4bd3f4d95e9 - 2.07% (30.8 MB)

[#025] sha256:e34ba7a363ea29f49feca83545962a636980489367076402b27b07aa4bfd79ef - 0.71% (10.6 MB)

[#026] sha256:8f52fe2ee9f23479f0bc60d718f5a52d8e62ead2b24d108d848c6deda346e771 - 22.79% (339 MB)

[#027] sha256:3fd4ee92639c8f4b3044953bc758fb664da8d7a7118d47a7a9b93addc511b976 - 6.24% (92.7 MB)

[#028] sha256:797a7e353c223de3a116df3859c473748f867b0398f6c7d0bbc19041c008df65 - 4.78% (71 MB)

[#029] sha256:753f415a6462a8e8285826be04aa829a31ac3c9d2e060db5a05163271caebcf4 - 5.17% (76.8 MB)

[#030] sha256:263fef5ef73b084fc63c1ae8812340188270a38b2f7fc285309111397b4fa47d - 1.28% (19 MB)

[#031] sha256:9a25b87879cc65923c11ceaef0e743fe0912061a41b40ba634ba138cc645530b - 0.4% (5.87 MB)

[#032] sha256:058da95eca5598cee99ac5ff9638b97b99eb30f116977ec3bdc61396317fd01f - 0.27% (4.02 MB)

[#033] sha256:9a328ee97cac4eb47ce4ff8152bdc2b4ab3fef3f26062385119f3e2231e1201f - 0.0% (2.13 KB)

[#034] sha256:6c2edcd82754b73d46c1d3160688a1d0c233da2b20114bf53d553cd70f4bf0db - 0.01% (183 KB)

[#035] sha256:2a13acb574b1978e07eeaca1413c2c8b687a5d997e2693bc892ac459d788bdc9 - 0.0% (724 Bytes)

[#036] sha256:8d45e53bd8fdf60b29a2485382c1f073793f833d97c48ea08ca45bc03d35fdce - 0.0% (367 Bytes)

[#037] sha256:26c858ba916eeaa763f946764621dc30bfb63c119af4a4c6fa4b662014f2c730 - 0.0% (382 Bytes)

[#038] sha256:21329070f6eff62e479d5dcd9dbde29823ec50fa3fa843d342c6ad1e5feb9024 - 0.0% (560 Bytes)

[#039] sha256:e6538bfc54680f6f23a54e8b7c34db165b374392fa4c22d52ad8785447504f23 - 0.0% (97 Bytes)

[#040] sha256:a9024c7be3b12ddc72fcdfc609b21214f984f5db934cc1aed7bc7f7d748ba1ee - 0.0% (165 Bytes)

History

2019-05-15 21:21:22 UTC

/bin/sh -c #(nop) ADD file:a65e0467dbedc0992151651c136374c16f65d9905eac9d04d0925039ada64e4c in /

2019-05-15 21:21:23 UTC

/bin/sh -c set -xe && echo '#!/bin/sh' > /usr/sbin/policy-rc.d && echo 'exit 101' >> /usr/sbin/policy-rc.d && chmod +x /usr/sbin/policy-rc.d && dpkg-divert --local --rename --add /sbin/initctl && cp -a /usr/sbin/policy-rc.d /sbin/initctl && sed -i 's/^exit.*/exit 0/' /sbin/initctl && echo 'force-unsafe-io' > /etc/dpkg/dpkg.cfg.d/docker-apt-speedup && echo 'DPkg::Post-Invoke { "rm -f /var/cache/apt/archives/*.deb /var/cache/apt/archives/partial/*.deb /var/cache/apt/*.bin || true"; };' > /etc/apt/apt.conf.d/docker-clean && echo 'APT::Update::Post-Invoke { "rm -f /var/cache/apt/archives/*.deb /var/cache/apt/archives/partial/*.deb /var/cache/apt/*.bin || true"; };' >> /etc/apt/apt.conf.d/docker-clean && echo 'Dir::Cache::pkgcache ""; Dir::Cache::srcpkgcache "";' >> /etc/apt/apt.conf.d/docker-clean && echo 'Acquire::Languages "none";' > /etc/apt/apt.conf.d/docker-no-languages && echo 'Acquire::GzipIndexes "true"; Acquire::CompressionTypes::Order:: "gz";' > /etc/apt/apt.conf.d/docker-gzip-indexes && echo 'Apt::AutoRemove::SuggestsImportant "false";' > /etc/apt/apt.conf.d/docker-autoremove-suggests

2019-05-15 21:21:24 UTC

/bin/sh -c rm -rf /var/lib/apt/lists/*

2019-05-15 21:21:24 UTC

/bin/sh -c mkdir -p /run/systemd && echo 'docker' > /run/systemd/container

2019-05-15 21:21:24 UTC

/bin/sh -c #(nop) CMD ["/bin/bash"]

2019-05-20 08:34:51 UTC

/bin/sh -c #(nop) LABEL base_image=ubuntu:16.04

2019-05-20 08:34:51 UTC

/bin/sh -c #(nop) LABEL version=2

2019-05-20 08:34:52 UTC

/bin/sh -c #(nop) LABEL software=biocontainers

2019-05-20 08:34:52 UTC

/bin/sh -c #(nop) LABEL software.version=1.1.0

2019-05-20 08:34:52 UTC

/bin/sh -c #(nop) LABEL about.summary=Base image for BioDocker

2019-05-20 08:34:53 UTC

/bin/sh -c #(nop) LABEL about.home=http://biocontainers.pro

2019-05-20 08:34:53 UTC

/bin/sh -c #(nop) LABEL about.documentation=https://github.com/BioContainers/specs/wiki

2019-05-20 08:34:54 UTC

/bin/sh -c #(nop) LABEL about.license_file=https://github.com/BioContainers/containers/blob/master/LICENSE

2019-05-20 08:34:54 UTC

/bin/sh -c #(nop) LABEL about.license=SPDX:Apache-2.0

2019-05-20 08:34:54 UTC

/bin/sh -c #(nop) LABEL about.tags=Genomics,Proteomics,Transcriptomics,General,Metabolomics

2019-05-20 08:34:55 UTC

/bin/sh -c #(nop) MAINTAINER Felipe da Veiga Leprevost <felipe@leprevost.com.br>

2019-05-20 08:34:55 UTC

/bin/sh -c #(nop) ENV DEBIAN_FRONTEND=noninteractive

2019-05-20 08:34:56 UTC

/bin/sh -c mv /etc/apt/sources.list /etc/apt/sources.list.bkp && bash -c 'echo -e "deb mirror://mirrors.ubuntu.com/mirrors.txt xenial main restricted universe multiverse\ndeb mirror://mirrors.ubuntu.com/mirrors.txt xenial-updates main restricted universe multiverse\ndeb mirror://mirrors.ubuntu.com/mirrors.txt xenial-backports main restricted universe multiverse\ndeb mirror://mirrors.ubuntu.com/mirrors.txt xenial-security main restricted universe multiverse\n\n" > /etc/apt/sources.list' && cat /etc/apt/sources.list.bkp >> /etc/apt/sources.list && cat /etc/apt/sources.list

2019-05-20 08:36:25 UTC

/bin/sh -c apt-get clean all && apt-get update && apt-get upgrade -y && apt-get install -y curl grep sed dpkg fuse git wget zip build-essential pkg-config bzip2 ca-certificates && apt-get clean && apt-get purge && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

2019-05-20 08:36:33 UTC

/bin/sh -c echo 'export PATH=/opt/conda/bin:$PATH' > /etc/profile.d/conda.sh && wget --quiet https://repo.continuum.io/miniconda/Miniconda2-4.0.5-Linux-x86_64.sh -O ~/miniconda.sh && /bin/bash ~/miniconda.sh -b -p /opt/conda && rm ~/miniconda.sh && chmod 777 -R /opt/conda/

2019-05-20 08:36:37 UTC

/bin/sh -c TINI_VERSION=`curl https://github.com/krallin/tini/releases/latest | grep -o "/v.*\"" | sed 's:^..$.*$.$:\1:'` && curl -L "https://github.com/krallin/tini/releases/download/v${TINI_VERSION}/tini_${TINI_VERSION}.deb" > tini.deb && dpkg -i tini.deb && rm tini.deb && apt-get clean

2019-05-20 08:36:38 UTC

/bin/sh -c mkdir /data /config

2019-05-20 08:36:39 UTC

/bin/sh -c groupadd fuse && useradd --create-home --shell /bin/bash --user-group --uid 1000 --groups sudo,fuse biodocker && echo `echo "biodocker\nbiodocker\n" | passwd biodocker` && chown biodocker:biodocker /data && chown biodocker:biodocker /config

2019-05-20 08:36:40 UTC

/bin/sh -c #(nop) USER [biodocker]

2019-05-20 08:36:40 UTC

/bin/sh -c #(nop) ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin

2019-05-20 08:36:40 UTC

/bin/sh -c #(nop) ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin

2019-05-20 08:36:41 UTC

/bin/sh -c #(nop) ENV HOME=/home/biodocker

2019-05-20 08:36:42 UTC

/bin/sh -c mkdir /home/biodocker/bin

2019-05-20 08:36:43 UTC

/bin/sh -c conda config --add channels r

2019-05-20 08:36:44 UTC

/bin/sh -c conda config --add channels bioconda

2019-05-20 08:37:00 UTC

/bin/sh -c conda upgrade conda

2019-05-20 08:37:01 UTC

/bin/sh -c #(nop) VOLUME [/data /config]

2019-05-20 08:37:01 UTC

/bin/sh -c #(nop) WORKDIR /data

2020-02-03 14:15:21 UTC

/bin/sh -c #(nop) LABEL base.image=biocontainers/biocontainers:v1.1.0_cv2

2020-02-12 17:04:09 UTC

/bin/sh -c #(nop) LABEL version=v4.0.4

2020-02-12 17:04:10 UTC

/bin/sh -c #(nop) LABEL software=BUSCO:Benchmarking Universal Single-Copy Orthologs

2020-02-12 17:04:12 UTC

/bin/sh -c #(nop) LABEL software.version=4.0.4

2020-02-12 17:04:14 UTC

/bin/sh -c #(nop) LABEL about.summary=Biodocker for BUSCO:Benchmarking Universal Single-Copy Orthologs

2020-02-12 17:04:15 UTC

/bin/sh -c #(nop) LABEL about.home=https://busco.ezlab.org/

2020-02-12 17:04:17 UTC

/bin/sh -c #(nop) LABEL about.documentation=https://busco.ezlab.org/busco_userguide.html

2020-02-12 17:04:19 UTC

/bin/sh -c #(nop) LABEL license=https://gitlab.com/ezlab/busco/blob/master/LICENSE

2020-02-12 17:04:20 UTC

/bin/sh -c #(nop) LABEL about.tags=genomics, transcriptomics, metagenomics, bioinformatics, evolution

2020-02-12 17:04:22 UTC

/bin/sh -c #(nop) MAINTAINER BUSCO Team <support@orthodb.org>

2020-02-12 17:04:24 UTC

/bin/sh -c #(nop) USER root

2020-02-12 17:04:25 UTC

/bin/sh -c #(nop) WORKDIR /

2020-02-12 17:04:46 UTC

/bin/sh -c apt-get update && apt-get install python3 python3-pip vim -y

2020-02-12 17:05:02 UTC

/bin/sh -c python3 -m pip install numpy dendropy biopython

2020-02-12 17:06:07 UTC

/bin/sh -c wget http://eddylab.org/software/hmmer/hmmer-3.2.1.tar.gz && tar xvfz hmmer-3.2.1.tar.gz && cd hmmer-3.2.1 && ./configure && make && make install

2020-02-12 17:06:09 UTC

/bin/sh -c #(nop) WORKDIR /

2020-02-12 17:06:18 UTC

/bin/sh -c wget http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.3.1.tar.gz

2020-02-12 17:06:32 UTC

/bin/sh -c tar -zxvf augustus-3.3.1.tar.gz && mv augustus-3.3.1 augustus

2020-02-12 17:07:02 UTC

/bin/sh -c apt-get update && apt-get install libboost-iostreams-dev bamtools libbamtools-dev lib32z1-dev mafft autoconf flex bison libtool libbz2-dev liblzma-dev libncurses5-dev -y

2020-02-12 17:07:07 UTC

/bin/sh -c mkdir /augustus/tools

2020-02-12 17:07:10 UTC

/bin/sh -c #(nop) WORKDIR /augustus/tools

2020-02-12 17:08:15 UTC

/bin/sh -c git clone https://github.com/samtools/htslib.git && cd htslib && autoheader && autoconf && ./configure && make && make install

2020-02-12 17:09:09 UTC

/bin/sh -c git clone https://github.com/samtools/bcftools.git && cd bcftools && autoheader && autoconf && ./configure && make && make install

2020-02-12 17:09:17 UTC

/bin/sh -c git clone https://github.com/samtools/tabix.git && cd tabix && make

2020-02-12 17:09:54 UTC

/bin/sh -c git clone https://github.com/samtools/samtools.git && cd samtools && autoheader && autoconf -Wno-syntax && ./configure && make && make install

2020-02-12 17:09:57 UTC

/bin/sh -c #(nop) WORKDIR /augustus

2020-02-12 17:11:41 UTC

/bin/sh -c TOOLDIR=/augustus/tools make

2020-02-12 17:11:45 UTC

/bin/sh -c #(nop) ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin:/augustus/bin:/augustus/scripts

2020-02-12 17:11:48 UTC

/bin/sh -c #(nop) ENV AUGUSTUS_CONFIG_PATH=/augustus/config

2020-02-12 17:11:51 UTC

/bin/sh -c #(nop) WORKDIR /

2020-02-12 17:12:14 UTC

/bin/sh -c wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz && tar zxvf ncbi-blast-2.2.31+-x64-linux.tar.gz

2020-02-12 17:12:42 UTC

/bin/sh -c apt-get update && apt-get install java1.7 -y

2020-02-12 17:12:45 UTC

/bin/sh -c #(nop) USER biodocker

2020-02-12 17:12:55 UTC

/bin/sh -c git clone https://github.com/smirarab/sepp.git /home/biodocker/sepp && cd /home/biodocker/sepp && git checkout tags/4.3.8 && python3 setup.py config && python3 setup.py install --user && chmod +x /home/biodocker/sepp/run_sepp.py && sed -i 's?/usr/bin/env python?/usr/bin/env python3?' /home/biodocker/sepp/run_sepp.py && sed -i 's?/home/biodocker/.sepp/bundled-v4.3.8/pplacer?/home/biodocker/sepp/tools/bundled/Linux/pplacer-32?' /home/biodocker/.sepp/main.config

2020-02-12 17:12:58 UTC

/bin/sh -c #(nop) USER root

2020-02-12 17:13:02 UTC

/bin/sh -c #(nop) ARG DEBIAN_FRONTEND=noninteractive

2020-02-12 17:13:33 UTC

/bin/sh -c apt-get update && apt-get install r-base -y

2020-02-12 17:16:21 UTC

/bin/sh -c Rscript -e 'install.packages("ggplot2", repos="https://cran.rstudio.com")'

2020-02-12 17:16:25 UTC

/bin/sh -c #(nop) WORKDIR /

2020-02-12 17:18:48 UTC

/bin/sh -c git clone https://github.com/hyattpd/Prodigal.git prodigal && cd prodigal && git checkout tags/v2.6.3 && make install

2020-02-12 17:18:52 UTC

/bin/sh -c #(nop) WORKDIR /

2020-02-12 17:18:59 UTC

/bin/sh -c git clone https://gitlab.com/ezlab/busco.git busco

2020-02-12 17:19:02 UTC

/bin/sh -c #(nop) WORKDIR /busco

2020-02-12 17:19:07 UTC

/bin/sh -c git checkout tags/4.0.4

2020-02-12 17:19:11 UTC

/bin/sh -c #(nop) ENV BUSCO_CONFIG_FILE=/busco/config/config.ini

2020-02-12 17:19:16 UTC

/bin/sh -c python3 setup.py install

2020-02-12 17:19:20 UTC

/bin/sh -c mv /usr/local/bin/busco /usr/local/bin/run_busco

2020-02-12 17:19:24 UTC

/bin/sh -c #(nop) ADD file:1fce410d479ef0bd41037abf404bfa264ee54b95c706c2d83ccbde831f906785 in /usr/bin

2020-02-12 17:19:28 UTC

/bin/sh -c #(nop) ADD file:95c6aa283563716569c1f781a1dd718b09c1ff45210f2b28c6e578bc07359032 in /usr/bin

2020-02-12 17:19:32 UTC

/bin/sh -c #(nop) ADD file:1b4e300b523a34649da8398f6d369f4d5515f5732ebc8aa8d842e547329edf94 in /usr/bin

2020-02-12 17:19:36 UTC

/bin/sh -c #(nop) WORKDIR /busco_wd

2020-02-12 17:19:40 UTC

/bin/sh -c chmod 777 /augustus/config/species/

2020-02-12 17:19:44 UTC

/bin/sh -c #(nop) USER biodocker

2020-02-12 17:19:48 UTC

/bin/sh -c #(nop) CMD ["intro.sh"]

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ezlabgva

busco:v4.0.4_cv1

sha256:334fcf642d8ed77232abfcb8485a1c3afec061191ec17651b0d0548eeaf6cfb9

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