Namespace
ncbi
Image / Tagpgap:2020-07-09.build4716
Content Digestsha256:3250e7b8aabea57826fe34c1241ef31fd7c8967bbe949ec87e150d34caad08c0
Details
2020-07-10 06:38:52 UTC
2.77 GB
Labels
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org.label-schema.build-date20191001
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org.label-schema.licenseGPLv2
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org.label-schema.nameCentOS Base Image
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org.label-schema.schema-version1.0
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org.label-schema.vendorCentOS
Environment
GP_HOME/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
NCBI/netopt/ncbi_tools64
NI_SERVICE_NAME_TAXONOMY3some bogus value
NI_SERVICE_NAME_TAXONOMYsome bogus value
PATH/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PGAP_VERSION2020-07-09.build4716
Layers
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History
/bin/sh -c #(nop) ADD file:45a381049c52b5664e5e911dead277b25fadbae689c0bb35be3c42dff0f2dffe in /
2019-11-12 00:20:33 UTC/bin/sh -c #(nop) LABEL org.label-schema.schema-version=1.0 org.label-schema.name=CentOS Base Image org.label-schema.vendor=CentOS org.label-schema.license=GPLv2 org.label-schema.build-date=20191001
2019-11-12 00:20:33 UTC/bin/sh -c #(nop) CMD ["/bin/bash"]
2020-04-15 11:16:53 UTC/bin/sh -c #(nop) ARG version
2020-04-15 11:16:54 UTC/bin/sh -c #(nop) ARG bindir
2020-04-15 11:16:55 UTC/bin/sh -c #(nop) ARG libdir
2020-04-15 11:16:56 UTC/bin/sh -c #(nop) ARG trnascan_version
2020-04-15 11:16:57 UTC/bin/sh -c #(nop) ARG ncbi_crisper_version
2020-04-15 11:16:58 UTC/bin/sh -c #(nop) USER root
2020-04-15 11:17:00 UTC/bin/sh -c #(nop) WORKDIR /root
2020-04-15 11:17:00 UTC/bin/sh -c #(nop) COPY --chown=root:rootdir:e1ca30cc86f73d361fdbb768997a580fc018538a40cc806e30d669f77f53c9ad in /etc
2020-07-10 04:08:11 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c echo "ip_resolve=4" >> /etc/yum.conf
2020-07-10 04:15:33 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c yum -y update && yum -y install yum-utils && yum -y groupinstall development
2020-07-10 04:15:44 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c yum -y install https://repo.ius.io/ius-release-el7.rpm https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
2020-07-10 04:16:51 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c yum -y install python36u python36u-pip python36u-devel nodejs
2020-07-10 04:19:51 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c yum -y install binutils perl sqlite ncbi-crispr${ncbi_crisper_version} nodejs ncbi-gcc730-opt-libs ncbi-gcc493-opt-libs PyYAML
2020-07-10 04:19:56 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c ln -s /usr/bin/perl /usr/bin/perl5.16 && ln -s /usr/bin/perl /opt/perl/5.16.3/bin/perl && ln -s /usr/bin/node /usr/bin/nodejs && rm /etc/yum.repos.d/ncbi.repo && echo -e "* soft nofile 8192\n* hard nofile 8192\n" >> /etc/security/limits.conf
2020-07-10 04:19:58 UTC/bin/sh -c #(nop) ENV PGAP_VERSION=2020-07-09.build4716
2020-07-10 04:20:00 UTC/bin/sh -c #(nop) ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
2020-07-10 04:20:03 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c mkdir -p ${GP_HOME} && ln -s /panfs/pan1.be-md.ncbi.nlm.nih.gov /panfs/pan1
2020-07-10 04:20:07 UTC/bin/sh -c #(nop) COPY file:aeb6727cb3ff81a24840e275d624d2d92025995375afe628c530fa6da984fb9b in /root
2020-07-10 04:20:11 UTC/bin/sh -c #(nop) WORKDIR /root
2020-07-10 04:20:49 UTC/bin/sh -c #(nop) COPY dir:9e0be1f7986b9cbd09ac0da9fcbb569a38fb4d5371210a06b50290938a9b8140 in /root/binaries
2020-07-10 04:20:58 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c tar xvPf infernal.tgz -C /
2020-07-10 04:21:00 UTC/bin/sh -c #(nop) WORKDIR /root/binaries
2020-07-10 04:22:34 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c tar --exclude='*/etc' --exclude='*/setup' --exclude='*/src.tar.gz' -xvf install.tar.gz -C /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system && tar xvPf linked_exe.tar -C / && tar xvPf libraries.tar -C / --skip-old-files && tar xvPf trnascan.tgz -C /
2020-07-10 04:22:42 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c cd /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/tRNAscan-SE/ && rm -rf production && ln -s ${trnascan_version} production
2020-07-10 04:22:45 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c mv ${GP_HOME}/next ${GP_HOME}/current && ln -s ${GP_HOME}/current/arch/x86_64/bin ${GP_HOME}/bin
2020-07-10 04:22:48 UTC/bin/sh -c #(nop) WORKDIR /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin
2020-07-10 04:23:06 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c find . -maxdepth 1 -type f -not -name "*.p*" -not -name "*.txt" -not -name "*.ini" -not -name "cluster_blastp_wnode" -print0 | xargs -0 -i strip {}
2020-07-10 04:23:09 UTC/bin/sh -c #(nop) WORKDIR /root
2020-07-10 04:23:12 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c useradd -ms /bin/bash gpipe
2020-07-10 04:23:14 UTC/bin/sh -c #(nop) ENV NCBI=/netopt/ncbi_tools64
2020-07-10 04:23:16 UTC/bin/sh -c #(nop) ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
2020-07-10 04:23:18 UTC/bin/sh -c #(nop) ENV PATH=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2020-07-10 04:23:19 UTC/bin/sh -c #(nop) ENV NI_SERVICE_NAME_TAXONOMY=some bogus value
2020-07-10 04:23:21 UTC/bin/sh -c #(nop) ENV NI_SERVICE_NAME_TAXONOMY3=some bogus value
2020-07-10 04:23:31 UTC/bin/sh -c #(nop) COPY dir:8275038e5a2717141680e68e4c5de4a9628ab251eafbe1e404edd28e188cb24b in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin
2020-07-10 04:23:33 UTC/bin/sh -c #(nop) COPY file:a1e1c06671c78b2ec4fa8950971e36f3c0dc5624127fa51dcd61d28601cd26f8 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/
2020-07-10 04:23:45 UTC/bin/sh -c #(nop) COPY multi:78473d92cb4d9c6e5df00e8b6fa1f3ed2c016cb1cb31c8030ebf1b0bf8e51a1f in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/bin/
2020-07-10 04:23:50 UTC/bin/sh -c #(nop) COPY multi:c129b80ff25c7de8f8d0b22d56ab7d70c10574aa4c14001f697c39c0eb866581 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin/
2020-07-10 04:23:52 UTC/bin/sh -c #(nop) COPY multi:f8150279596baa1727b51d7a208165254e1726b7b8d05490f850c7be5892a419 in /lib64/
2020-07-10 04:23:53 UTC/bin/sh -c #(nop) COPY file:3969a3de030a1e912e8aa87e0f0577e99e8a49b63a53aaa467d5a0358cba7287 in /netopt/ncbi_tools64/.ncbirc
2020-07-10 04:23:56 UTC|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2020-07-09.build4716/arch/x86_64/lib ncbi_crisper_version=1.01 trnascan_version=2.0.4 version=2020-07-09.build4716 /bin/sh -c rm -rf binaries
2020-07-10 04:23:58 UTC/bin/sh -c #(nop) WORKDIR /home/gpipe
2020-07-10 04:23:59 UTC/bin/sh -c #(nop) CMD ["/usr/bin/bash"]
2020-07-10 06:37:45 UTC/bin/sh -c #(nop) USER root
2020-07-10 06:37:52 UTC/bin/sh -c #(nop) COPY dir:435097e81678001e7c573a98e3b935ff674a44c6c2421226ced702a26d16492b in /pgap/pgap
2020-07-10 06:37:54 UTC/bin/sh -c #(nop) WORKDIR /pgap
2020-07-10 06:38:49 UTC/bin/sh -c pip3.6 install -U cwltool[deps] PyYAML cwlref-runner
2020-07-10 06:38:51 UTC/bin/sh -c mkdir /pgap/input
2020-07-10 06:38:52 UTC/bin/sh -c #(nop) CMD ["/bin/sh"]
Delete Tag
Please be careful as this will not just delete the reference but also the actual content!
For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.