Namespace
ncbi
Image / Tagpgap:2023-05-17.build6771
Content Digestsha256:6067b42ef74eca02fb754be07c78ca2f40dccb0ca3e48edfe7ec204b2a872ce7
Details
2023-05-18 00:59:59 UTC
4.8 GB
Labels
-
org.label-schema.build-date20201113
-
org.label-schema.licenseGPLv2
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org.label-schema.nameCentOS Base Image
-
org.label-schema.schema-version1.0
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org.label-schema.vendorCentOS
-
org.opencontainers.image.created2020-11-13 00:00:00+00:00
-
org.opencontainers.image.licensesGPL-2.0-only
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org.opencontainers.image.titleCentOS Base Image
-
org.opencontainers.image.vendorCentOS
Environment
GP_HOME/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
NCBI/netopt/ncbi_tools64
NI_SERVICE_NAME_TAXONOMY3some bogus value
NI_SERVICE_NAME_TAXONOMYsome bogus value
PATH/root/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PGAP_VERSION2023-05-17.build6771
Layers
[#000] sha256:2d473b07cdd5f0912cd6f1a703352c82b512407db6b05b43f2553732b55df3bc - 1.48% (72.6 MB)
[#001] sha256:fd3c75c0fa25bdfb56013318cf34702a5192223a164cc53f673a8eeb29402324 - 0.0% (1.05 KB)
[#002] sha256:af1e12bd8ff0645fe973fb03eb01d2ba4ea63160387342019b4955f25608116c - 0.0% (760 Bytes)
[#003] sha256:86dab4a812e8efb8a17ae3ddd393113b05f29830faa3efa0875530eeca91996f - 3.08% (151 MB)
[#004] sha256:71a2bc24fdd6708554b28f8c03981082712da8094d609dc63862c34fb3674842 - 2.06% (101 MB)
[#005] sha256:e70e945dfa5bb767c0b8e1bb5599dc82a5a2cae5a82bc957c7a2d8e4299ab168 - 5.13% (252 MB)
[#006] sha256:c860cdfcca657e4e35d33b7c430231c12509922579387a03c6be5dbb522094cc - 0.22% (10.6 MB)
[#007] sha256:e1d8ceff4dc70e7d4b4fdd9c88dc6e96b71e9fb28660ead24462d5fa396d3957 - 2.53% (124 MB)
[#008] sha256:d05a1c71221d8c361e17fbde1069d2fcbc1e7a0fd348e375fadc530051d706b6 - 4.15% (204 MB)
[#009] sha256:290ba1615676cc92b4ca2dfe7c3490c9f2bb83d446bea04057bca9d8acfeda88 - 5.06% (248 MB)
[#010] sha256:b6374d8d8563fb1afe19c10a93230b74fb758de8ae020c3cd70a86d1613e381c - 2.17% (106 MB)
[#011] sha256:2749f2b1cbda3160c78a07be97852c32be16237878132a7f6df8fa2a4787426c - 0.0% (1.29 KB)
[#012] sha256:f407f03f168fdf5362c16845e23313009401434b87afeaac58fcf8e7bf5417ab - 0.1% (5.01 MB)
[#013] sha256:9ab6cde5380575d2c36927b542af6e26573e8fba91cd3e126a6949c8645b3f21 - 0.72% (35.5 MB)
[#014] sha256:fdb04150f8a57addb48e00363489b4ce4bc2362a6e806cd989a14ef15e476e5f - 0.79% (38.8 MB)
[#015] sha256:1d5c158952be70049f0b2fa54d4e48dea74179af614581fdb062bbe39bb1aad8 - 0.77% (37.6 MB)
[#016] sha256:c385a6b575b207e8b7fae4b844ba8711093a623ec7e0101bc253d320c90c062b - 1.45% (71.4 MB)
[#017] sha256:c19f58d49e1577a3be1702eb83658ad161835be4934a5d1d2179d69c109111fe - 0.0% (385 Bytes)
[#018] sha256:c587455093c6590d35d6746ad952f7fc0f96ac0a0eb53c945e5217ad0e85f3ec - 0.0% (256 Bytes)
[#019] sha256:90e53f509980f54a7371dd8c2d08bc944cc6cd06c00fedbbdba99938856fc3b3 - 0.24% (12 MB)
[#020] sha256:88a894b56b56a87581a9d221aaac05ac78dd8595f269d9061ef9a83b8eeaa4c4 - 0.05% (2.54 MB)
[#021] sha256:52c65fa73e662f9ed6f7d36280aa3b31124a33c7a65741fdc39265708843bd10 - 0.61% (30 MB)
[#022] sha256:11d5db4fc60f0e2e12197399d5833242f0d35f14a21bf36c7e1532c7f967b333 - 25.68% (1.23 GB)
[#023] sha256:8b52d9fe9d733082628e4caeb4ec8856eddb6854ff975972a7e058523af21afe - 0.24% (12 MB)
[#024] sha256:4d2b034a6e487e5bee67872a4d9cb6ef2ba796b79ed653c5395e6e15cf17ed0a - 0.05% (2.54 MB)
[#025] sha256:b158b4fe7edf30d219982e2c9bd9df6412a3e52a8a922da4cdd2d93eafd94a24 - 0.61% (30 MB)
[#026] sha256:b26eeb1f066c58c2897083177d81125d4210b44441860bc7ff110fe1c961db52 - 18.06% (887 MB)
[#027] sha256:cfb4cfec6ad16691c84859a8d3af4277ea17ecd20c899ee6d2ddd6c5163c14fb - 0.75% (37 MB)
[#028] sha256:4a025da8e6d46a4580460a68128f7b87b9cd0365e2e615f967276c9f5b42ae07 - 0.0% (262 Bytes)
[#029] sha256:5a6e7649b0036e3ca3c853566c9e700eb93d8cea456d18a056c4a18afdd35f00 - 0.0% (319 Bytes)
[#030] sha256:540d019f5ca1b9aa0710d2884b0432f019e2974df3677c1ddc4185748502edd3 - 1.06% (51.9 MB)
[#031] sha256:afab7cc9f6579836b589f665de125d38e5b18f5f8791d8fa20a963444b506bce - 0.0% (2.28 KB)
[#032] sha256:c29bfbf435a9d214ceecc731b216ff898426e08b107d51864ab5fd2a53bbb076 - 2.22% (109 MB)
[#033] sha256:bce94b305b2cf9d53e8609d3dae99246e2ac6446760b182624587aa95942cd87 - 1.13% (55.3 MB)
[#034] sha256:e9955115d531332b965fa0e15e0b2c5c1d014f10e83dce3e82b58934210654bd - 0.0% (341 Bytes)
[#035] sha256:dc032dee91a3555ed4bdd660e10e73640a6cb76f22803ce94948149fc9d0bd5d - 2.22% (109 MB)
[#036] sha256:3eb69b9dc26493766c621f0327be128c2132c8ed95cef3c409d926524da203fe - 0.0% (742 Bytes)
[#037] sha256:73e5ecba0f3bc799b0284a4d8d5c7480ffe5ecb12945307907800664feb4f50c - 4.98% (245 MB)
[#038] sha256:384e535401d91afe1c1987fa0b5000da6db243adeef3162b26fbe94ac8074a36 - 0.0% (8.53 KB)
[#039] sha256:b9e498c1de1b79a33869c8734f42ecdc346ca394029107118b369ad175531b69 - 0.16% (7.63 MB)
[#040] sha256:d6ea7812ce20d842f3247eca9f2e7a027c6def639a357ab0184738110e0c1217 - 0.0% (200 Bytes)
[#041] sha256:03595e96cf75f0eaa26ecf18010066ae38cc7bc6c8972ba33a504fa95efd5157 - 0.0% (121 KB)
[#042] sha256:002147b98c056b60435b879bc91daeb28c07dfc14fdc3e73c4b63acf5003406f - 0.0% (629 Bytes)
[#043] sha256:9208bb64d97d71f872bd0fee66d90c9d3eabae399be7bf59bca83aa66d6b23bc - 0.0% (131 Bytes)
[#044] sha256:296ba41e20e85832f518749dd27a4cd1d15d10d7656077a43b009ebee66967ff - 0.0% (277 Bytes)
[#045] sha256:9ed108745efa1094dae39964056a67ec36df007c8a60ddc33c166abf513b8cfd - 4.74% (233 MB)
[#046] sha256:ebfdc84490a79295208d07ec6a0fb06c7fff2e7dc762e90ac7b66b2bb042e360 - 0.78% (38.2 MB)
[#047] sha256:4e40ee51ff15ca47ee95f728b6f91eb986a46559a14ba62a68a1cef03f63395f - 0.01% (395 KB)
[#048] sha256:7d4cd3fc8840c324baaa368d8ad143674a8bb8449f7bc35b55e07b3020f500ac - 0.03% (1.34 MB)
[#049] sha256:2156007be87733fe46023843aefb17fe6a4a740209a0d44ca9f9dd6d824b5c55 - 0.0% (34.3 KB)
[#050] sha256:7238951fe3557e7949728e687e9bfec4b8306aa3eebeb791fc3dec2537f744d1 - 0.95% (46.8 MB)
[#051] sha256:7630da534ef1b3d6d9e27d7ed2f4e7bc0e8b1f30334c73c67c2abf775667f87e - 0.0% (4.88 KB)
[#052] sha256:e9d10cad0eb38f1ffc82316838bdd847dcca91f84b2413446755347d6b7c34e7 - 5.72% (281 MB)
[#053] sha256:d7e95bbbc84bd42c8e1db12f10d8822484de141d8cfef981660af613920a4b6b - 0.0% (148 Bytes)
History
/bin/sh -c #(nop) ADD file:b3ebbe8bd304723d43b7b44a6d990cd657b63d93d6a2a9293983a30bfc1dfa53 in /
2021-09-15 18:20:23 UTC/bin/sh -c #(nop) LABEL org.label-schema.schema-version=1.0 org.label-schema.name=CentOS Base Image org.label-schema.vendor=CentOS org.label-schema.license=GPLv2 org.label-schema.build-date=20201113 org.opencontainers.image.title=CentOS Base Image org.opencontainers.image.vendor=CentOS org.opencontainers.image.licenses=GPL-2.0-only org.opencontainers.image.created=2020-11-13 00:00:00+00:00
2021-09-15 18:20:23 UTC/bin/sh -c #(nop) CMD ["/bin/bash"]
2023-02-04 00:52:11 UTC/bin/sh -c #(nop) ARG version
2023-02-04 00:52:12 UTC/bin/sh -c #(nop) ARG bindir
2023-02-04 00:52:12 UTC/bin/sh -c #(nop) ARG libdir
2023-02-04 00:52:12 UTC/bin/sh -c #(nop) ARG trnascan_version
2023-02-04 00:52:12 UTC/bin/sh -c #(nop) ARG ncbi_crisper_version
2023-02-04 00:52:12 UTC/bin/sh -c #(nop) ARG prodigal_version
2023-02-04 00:52:12 UTC/bin/sh -c #(nop) ARG pplacer_version
2023-02-04 00:52:13 UTC/bin/sh -c #(nop) USER root
2023-02-04 00:52:13 UTC/bin/sh -c #(nop) WORKDIR /root
2023-05-09 12:34:28 UTC/bin/sh -c #(nop) COPY --chown=root:rootdir:212a1371d11ca59f14e070bf312733128fb17b7d1973c680464da431dac45c71 in /etc
2023-05-18 00:03:52 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c echo "ip_resolve=4" >> /etc/yum.conf
2023-05-18 00:05:38 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y update -v
2023-05-18 00:05:41 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y install yum-utils
2023-05-18 00:07:25 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y groupinstall development
2023-05-18 00:07:28 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y install https://repo.ius.io/ius-release-el7.rpm https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
2023-05-18 00:07:40 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y install ncbi-python37 nodejs
2023-05-18 00:09:01 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y install binutils perl sqlite ncbi-crispr${ncbi_crisper_version} nodejs ncbi-gcc730-opt-libs ncbi-gcc493-opt-libs PyYAML
2023-05-18 00:09:47 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum makecache
2023-05-18 00:09:51 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c yum -y install bzip2-devel xz-devel zlib-devel
2023-05-18 00:09:52 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c ln -s /usr/bin/perl /usr/bin/perl5.16 && ln -s /usr/bin/perl /opt/perl/5.16.3/bin/perl && ln -s /usr/bin/node /usr/bin/nodejs && rm /etc/yum.repos.d/ncbi.repo && echo -e "* soft nofile 8192\n* hard nofile 8192\n" >> /etc/security/limits.conf
2023-05-18 00:09:57 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c /opt/python-3.9/bin/python3.9 -m venv venv
2023-05-18 00:10:02 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c venv/bin/pip3 install -U numpy
2023-05-18 00:10:08 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c venv/bin/pip3 install -U matplotlib
2023-05-18 00:12:23 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c venv/bin/pip3 install -U pysam
2023-05-18 00:12:29 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c venv/bin/pip3 install -U checkm-genome
2023-05-18 00:12:30 UTC/bin/sh -c #(nop) COPY file:1704ef0fbbe5e868a888a21fd8d9fe507b5c1f5739eecdfab7d2fccd5ace9691 in /root/venv/lib/python3.9/site-packages/checkm/DATA_CONFIG
2023-05-18 00:12:30 UTC/bin/sh -c #(nop) ENV PGAP_VERSION=2023-05-17.build6771
2023-05-18 00:12:31 UTC/bin/sh -c #(nop) ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
2023-05-18 00:12:32 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c mkdir -p ${GP_HOME} && ln -s /panfs/pan1.be-md.ncbi.nlm.nih.gov /panfs/pan1
2023-05-18 00:12:32 UTC/bin/sh -c #(nop) COPY file:af2cfb6ffb05b96510a1a2a11ce2a130db95a5d59e6d87d150d46944c8e2d240 in /root
2023-05-18 00:12:33 UTC/bin/sh -c #(nop) COPY file:5f827efeb53bd6148c82fbfb980f13566aac86704e02d40c12b5e348f4a41003 in /root
2023-05-18 00:12:33 UTC/bin/sh -c #(nop) COPY file:eb26204616f7bc18c589733a8cfec1cafdb5020e4f0968ac418f829cd2c725c6 in /root
2023-05-18 00:12:34 UTC/bin/sh -c #(nop) WORKDIR /root
2023-05-18 00:12:41 UTC/bin/sh -c #(nop) COPY dir:d83ef00b56ab1a7abde92f7a927f30bed58a444cb881cbf6037fd1cb213d5379 in /root/binaries
2023-05-18 00:12:43 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c tar xvPf infernal.tgz -C /
2023-05-18 00:12:45 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c tar xvPf prodigal.tgz -C /
2023-05-18 00:12:46 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c tar xvPf pplacer.tgz -C /
2023-05-18 00:12:47 UTC/bin/sh -c #(nop) WORKDIR /root/binaries
2023-05-18 00:13:19 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c tar --exclude='*/etc' --exclude='*/setup' --exclude='*/src.tar.gz' -xvf install.tar.gz -C /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system && tar xvPf linked_exe.tar -C / && tar xvPf libraries.tar -C / --skip-old-files && tar xvPf trnascan.tgz -C /
2023-05-18 00:13:22 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c mkdir /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/GeneMark && cd /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/GeneMark && tar xvf /root/binaries/genemark.tgz
2023-05-18 00:13:23 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c cd /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/tRNAscan-SE/ && rm -rf production && ln -s ${trnascan_version} production
2023-05-18 00:13:25 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c mv ${GP_HOME}/next ${GP_HOME}/current && ln -s ${GP_HOME}/current/arch/x86_64/bin ${GP_HOME}/bin
2023-05-18 00:13:25 UTC/bin/sh -c #(nop) WORKDIR /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin
2023-05-18 00:13:28 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c find . -maxdepth 1 -type f -not -name "*.p*" -not -name "*.txt" -not -name "*.ini" -not -name "cluster_blastp_wnode" -print0 | xargs -0 -i strip {}
2023-05-18 00:13:29 UTC/bin/sh -c #(nop) WORKDIR /root
2023-05-18 00:13:30 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c useradd -ms /bin/bash gpipe
2023-05-18 00:13:30 UTC/bin/sh -c #(nop) ENV NCBI=/netopt/ncbi_tools64
2023-05-18 00:13:31 UTC/bin/sh -c #(nop) ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
2023-05-18 00:13:32 UTC/bin/sh -c #(nop) ENV PATH=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2023-05-18 00:13:32 UTC/bin/sh -c #(nop) ENV PATH=/root/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2023-05-18 00:13:33 UTC/bin/sh -c #(nop) ENV NI_SERVICE_NAME_TAXONOMY=some bogus value
2023-05-18 00:13:33 UTC/bin/sh -c #(nop) ENV NI_SERVICE_NAME_TAXONOMY3=some bogus value
2023-05-18 00:13:35 UTC/bin/sh -c #(nop) COPY dir:38870db4822069cf07d10dc6a5e04cb877575d502dcc9a26a87124217d709412 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin
2023-05-18 00:13:36 UTC/bin/sh -c #(nop) COPY dir:92a61411e181d375cfd5980be6b96859d016c464d508b2b78fdc68bd85828348 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin
2023-05-18 00:13:36 UTC/bin/sh -c #(nop) COPY file:5e88e86333eca3b2642c8f0550f7aaa43d93dd4a3d6ec8edaad8d0712f911fa5 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/
2023-05-18 00:13:38 UTC/bin/sh -c #(nop) COPY multi:a7370b564333fc1d6d434f9de13ffd37c4b0827e418a26bc4f321377d3fc762d in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/bin/
2023-05-18 00:13:39 UTC/bin/sh -c #(nop) COPY file:027a04a8839caf6c1c066c5569f2f3c13b8e7427dc063ad78c237c5fe7874bd7 in /root
2023-05-18 00:13:43 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c ./cleanup_image.sh
2023-05-18 00:13:44 UTC/bin/sh -c #(nop) COPY multi:88ce6277b6f6b2207fb58fc31c54ef0afc5e1f8b5d3d59f9a5cf9643d117dbc0 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin/
2023-05-18 00:13:45 UTC/bin/sh -c #(nop) COPY multi:938ec9b55745c523210ced460f7b3ae305a3465bec777ce2ca1c1067f32a2c06 in /lib64/
2023-05-18 00:13:46 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c mkdir -p /opt/ncbi/64/lmdb-0.9.24/lib64/
2023-05-18 00:13:46 UTC/bin/sh -c #(nop) COPY file:43954742ab4272140c1db78047033c5688c793a779a1ace4199e82899b9630c0 in /opt/ncbi/64/lmdb-0.9.24/lib64/liblmdb.so
2023-05-18 00:13:46 UTC/bin/sh -c #(nop) COPY file:3969a3de030a1e912e8aa87e0f0577e99e8a49b63a53aaa467d5a0358cba7287 in /netopt/ncbi_tools64/.ncbirc
2023-05-18 00:13:47 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c rm -rf binaries
2023-05-18 00:13:48 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c echo 'export PS1="$ "' >> /root/.bash_profile
2023-05-18 00:13:49 UTC/bin/sh -c #(nop) WORKDIR /home/gpipe
2023-05-18 00:13:55 UTC|7 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2023-05-17.build6771/arch/x86_64/lib ncbi_crisper_version=1.02 pplacer_version=1.1a18 prodigal_version=2.6.3 trnascan_version=2.0.12 version=2023-05-17.build6771 /bin/sh -c chmod -R a+rx /root/
2023-05-18 00:13:56 UTC/bin/sh -c #(nop) CMD ["/usr/bin/bash"]
2023-05-18 00:59:26 UTC/bin/sh -c #(nop) USER root
2023-05-18 00:59:28 UTC/bin/sh -c #(nop) COPY dir:c7e7e1cbdd07528df2d126a0b48dea55c4412953dd291df83e04bf3ea7fcc0d0 in /pgap/pgap
2023-05-18 00:59:29 UTC/bin/sh -c #(nop) WORKDIR /root
2023-05-18 00:59:31 UTC/bin/sh -c venv/bin/pip3 install -U 'urllib3<2'
2023-05-18 00:59:33 UTC/bin/sh -c venv/bin/pip3 install -U PyYAML
2023-05-18 00:59:34 UTC/bin/sh -c venv/bin/pip3 install -U filelock
2023-05-18 00:59:46 UTC/bin/sh -c venv/bin/pip3 install -U cwltool[deps]
2023-05-18 00:59:49 UTC/bin/sh -c venv/bin/pip3 install -U cwlref-runner
2023-05-18 00:59:56 UTC/bin/sh -c chmod -R a+rx /root/
2023-05-18 00:59:58 UTC/bin/sh -c mkdir /pgap/input
2023-05-18 00:59:58 UTC/bin/sh -c #(nop) WORKDIR /pgap
2023-05-18 00:59:59 UTC/bin/sh -c #(nop) CMD ["/bin/sh"]
Delete Tag
Please be careful as this will not just delete the reference but also the actual content!
For example when you have latest and v1.2.3 both pointing to the same image
the deletion of latest will also permanently remove v1.2.3.